• Mashup Score: 3

    On February 7th, 2023, an alert was given by the Ministry of Health in the district of Kie Ntem province, in eastern Equatorial Guinea. Several patients presented with symptoms suggestive of hemorrhagic fever, and a mortality cluster (n=9 deaths) was finally reported. An additional eight blood samples were collected from other contacts and sent to the regional WHO reference center for arboviruses…

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  • Mashup Score: 2

    Title: Wastewater samples CANNOT be used for genome assembly Author: Alejandro Gener, PhD AIDS Editorial Board, Los Angeles, California, USA Correspondence to: Dr. Alejandro Gener itspronouncedhenner@gmail.com Conflicts of interest: I received travel bursaries from Oxford Nanopore Technologies in 2019. I am the founder of Student Genomics. Funding: No funding was provided for this work. …

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    • RT @virological_org: Wastewater samples CANNOT be used for genome assembly https://t.co/VXeAxDw6Zn

  • Mashup Score: 121

    SARS-CoV-2 evolution, post-Omicron Cornelius Roemer1, Ryan Hisner2, Nicholas Frohberg2, Hitoshi Sakaguchi3, Federico Gueli4, Thomas P. Peacock5 1Biozentrum, University of Basel, Basel, Switzerland; Swiss Institute of Bioinformatics 2Independent Researcher, USA 3Retired, Japan 4Independent Researcher, Italy 5Department of Infectious Disease, Imperial College London, UK *corresponding…

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    • RT @EricTopol: Evolution of the Omicron family of variants https://t.co/UnFls9aXeq by @CorneliusRoemer @LongDesertTrain @PeacockFlu and col…

  • Mashup Score: 22

    SARS-CoV-2 evolution, post-Omicron Cornelius Roemer1, Ryan Hisner2, Nicholas Frohberg2, Hitoshi Sakaguchi3, Federico Gueli4, Thomas P. Peacock5 1Biozentrum, University of Basel, Basel, Switzerland; Swiss Institute of Bioinformatics 2Independent Researcher, USA 3Retired, Japan 4Independent Researcher, Italy 5Department of Infectious Disease, Imperial College London, UK *corresponding…

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    • Evolution of the Omicron family of variants https://t.co/UnFls9aXeq by @CorneliusRoemer @LongDesertTrain @PeacockFlu and colleagues "It is entirely possible all the lineages described here would be outcompeted in the event of a second ‘Omicron-like event’" https://t.co/W0C7lTKx40

  • Mashup Score: 2

    SARS-CoV-2 evolution, post-Omicron Cornelius Roemer1, Ryan Hisner2, Nicholas Frohberg2, Hitoshi Sakaguchi3, Federico Gueli4, Thomas P. Peacock5 1Biozentrum, University of Basel, Basel, Switzerland; Swiss Institute of Bioinformatics 2Independent Researcher, USA 3Retired, Japan 4Independent Researcher, Italy 5Department of Infectious Disease, Imperial College London, UK *corresponding…

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    • RT @MarionKoopmans: but scenario that needs to be considered. https://t.co/nltD7TsrGn Thanks @CorneliusRoemer for this very clear summary

  • Mashup Score: 3

    SARS-CoV-2 evolution, post-Omicron Cornelius Roemer1, Ryan Hisner2, Nicholas Frohberg2, Hitoshi Sakaguchi3, Federico Gueli4, Thomas P. Peacock5 1Biozentrum, University of Basel, Basel, Switzerland; Swiss Institute of Bioinformatics 2Independent Researcher, USA 3Retired, Japan 4Independent Researcher, Italy 5Department of Infectious Disease, Imperial College London, UK *corresponding…

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    • but scenario that needs to be considered. https://t.co/nltD7TsrGn Thanks @CorneliusRoemer for this very clear summary

  • Mashup Score: 4
    Virological - 2 year(s) ago

    A discussion forum for analysis and interpretation of virus molecular evolution and epidemiology.

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    • 4. All this and more detail about the case is revealed in a wonderful report from @PlacideMbala & others posted today on https://t.co/MnB1vTCapf. Already, scientists at DRC's @inrb_kinshasa have sequenced & analyzed #Ebola virus from this new case.

  • Mashup Score: 6

    The new case of Ebola Virus Disease in Beni is genetically linked to the 2018-2020 Nord Kivu/Ituri EVD outbreak and does not represent a new spillover event.** Context On Monday, August 15, 2022, the Institut National de Recherche Biomédicale (INRB) Beni mobile laboratory received an oropharyngeal secretion sample taken from a deceased patient who was being treated at the Beni General Reference…

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    • 6. The 1st: This woman could have been a survivor from 2018 who was persistently infected & relapsed. The 2nd: She was infected, potentially via sex, by an #Ebola survivor who has persistent infection. You can read the full report here: https://t.co/LXvWjwLJ0F

  • Mashup Score: 20

    A further update to these posts: Initial observations about putative APOBEC3 deaminase editing driving short-term evolution of MPXV since 2017 Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA Áine O’Toole & Andrew Rambaut Institute of Ecology and Evolution University of Edinburgh 2022-06-05 We gratefully acknowledge the groups that have…

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    • This was posted while I was away, but very interesting and important work on the date the current monkeypox outbreak virus start circulating among humans - it's been a while https://t.co/d7K3sw5CtR 1/n

  • Mashup Score: 13

    A further update to these posts: Initial observations about putative APOBEC3 deaminase editing driving short-term evolution of MPXV since 2017 Update to observations about putative APOBEC3 deaminase editing in the light of new genomes from USA Áine O’Toole & Andrew Rambaut Institute of Ecology and Evolution University of Edinburgh 2022-06-05 We gratefully acknowledge the groups that have…

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    • RT @virological_org: An APOBEC3 molecular clock to estimate the data of emergence of hMPXV https://t.co/7AUDGUYkft